TY - JOUR
T1 - Identification of candidate genes involved in the salt tolerance of date palm (Phoenix dactylifera L.) Based on a yeast functional bioassay
AU - Patankar, Himanshu V.
AU - Al-Harrasi, Ibtisam
AU - Al-Yahyai, Rashid
AU - Yaish, Mahmoud W.
N1 - Funding Information:
This project is supported by the generous grant number 151 from the research council (TRC), Oman to M.W.Y.
Publisher Copyright:
© 2018 Mary Ann Liebert, Inc.
PY - 2018/6
Y1 - 2018/6
N2 - Although date palm is a relatively salt-tolerant plant, the molecular basis of this tolerance is complex and poorly understood. Therefore, this study aimed to identify the genes involved in salinity tolerance using a basic yeast functional bioassay. To achieve this, a date palm cDNA library was overexpressed in Saccharomyces cerevisiae cells. The expression levels of selected genes that make yeast cells tolerant to salt were subsequently validated in the leaf and root tissues of date palm seedlings using a quantitative PCR method. About 6000 yeast transformant cells were replica printed and screened on a synthetic minimal medium containing 1.0 M of NaCl. The screening results showed the presence of 62 salt-tolerant transformant colonies. Sequence analysis of the recombinant yeast plasmids revealed the presence of a group of genes with potential salt-tolerance functions, such as aquaporins (PIP), serine/threonine protein kinases (STKs), ethylene-responsive transcription factor 1 (ERF1), and peroxidases (PRX). The expression pattern of the selected genes endorsed the hypothesis that these genes may be involved in salinity tolerance, as they showed a significant (p < 0.05) overexpression trend in both the leaf and root tissues in response to salinity. The genes identified in this project are suitable candidates for the further functional characterization of date palms.
AB - Although date palm is a relatively salt-tolerant plant, the molecular basis of this tolerance is complex and poorly understood. Therefore, this study aimed to identify the genes involved in salinity tolerance using a basic yeast functional bioassay. To achieve this, a date palm cDNA library was overexpressed in Saccharomyces cerevisiae cells. The expression levels of selected genes that make yeast cells tolerant to salt were subsequently validated in the leaf and root tissues of date palm seedlings using a quantitative PCR method. About 6000 yeast transformant cells were replica printed and screened on a synthetic minimal medium containing 1.0 M of NaCl. The screening results showed the presence of 62 salt-tolerant transformant colonies. Sequence analysis of the recombinant yeast plasmids revealed the presence of a group of genes with potential salt-tolerance functions, such as aquaporins (PIP), serine/threonine protein kinases (STKs), ethylene-responsive transcription factor 1 (ERF1), and peroxidases (PRX). The expression pattern of the selected genes endorsed the hypothesis that these genes may be involved in salinity tolerance, as they showed a significant (p < 0.05) overexpression trend in both the leaf and root tissues in response to salinity. The genes identified in this project are suitable candidates for the further functional characterization of date palms.
KW - bioassay
KW - date palm
KW - functional characterization
KW - Saccharomyces cerevisiae
KW - salt tolerance
KW - yeast
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U2 - 10.1089/dna.2018.4159
DO - 10.1089/dna.2018.4159
M3 - Article
C2 - 29596001
AN - SCOPUS:85048245529
SN - 1044-5498
VL - 37
SP - 524
EP - 534
JO - DNA and Cell Biology
JF - DNA and Cell Biology
IS - 6
ER -